Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| GBM | rs148984215 | chr3:14719476 | G/GCCAACTTCAGTAGTTTC | 7.47E-5 | 148 | 1.1 | 12.97 | 10.77 | KM Plot |
| GBM | rs150189935 | chr17:26994519 | GTA/G | 2.07E-5 | 145 | 12 | 7.73 | 1.2 | KM Plot |
| GBM | rs1559323 | chr16:67447255 | C/G | 8.86E-8 | 147 | 12 | 9.8 | 0.97 | KM Plot |
| GBM | rs1574575 | chr3:14721633 | C/T | 7.11E-5 | 149 | 1.1 | 12.97 | 10.67 | KM Plot |
| GBM | rs161818 | chr1:7987552 | T/C | 2.42E-5 | 147 | 11.42 | 7.97 | 1.1 | KM Plot |
| GBM | rs16636 | chr6:26270683 | A/AACTATCAGCC | 4.11E-11 | 149 | 12.37 | 10.48 | 0.73 | KM Plot |
| GBM | rs16956236 | chr16:82059890 | C/G | 7.57E-8 | 149 | 12 | 7.27 | 1.62 | KM Plot |
| GBM | rs16964481 | chr17:26993387 | G/A | 2.06E-5 | 146 | 11.95 | 7.73 | 1.2 | KM Plot |
| GBM | rs16964503 | chr17:27013468 | C/T | 2.22E-5 | 146 | 12 | 8.37 | 1.2 | KM Plot |
| GBM | rs16977140 | chr17:70197291 | A/G | 1.28E-5 | 149 | 12 | 2.77 | 7.27 | KM Plot |
| GBM | rs17004186 | chr22:24262015 | C/T | 2.07E-5 | 143 | 11.43 | 13.17 | 0.97 | KM Plot |
| GBM | rs17053573 | chr6:126133823 | C/T | 8.5E-12 | 149 | 0.98 | 10.57 | 12 | KM Plot |
| GBM | rs1712 | chr6:153291865 | C/T | 3.89E-5 | 149 | 11.42 | 11.9 | 3.53 | KM Plot |
| GBM | rs17300406 | chr15:84764774 | T/G | 1.44E-8 | 148 | 11.1 | 12.7 | 0.87 | KM Plot |
| GBM | rs17545367 | chr5:151773694 | A/T | 3.5E-8 | 146 | 11.28 | 11.1 | 0.87 | KM Plot |